RetrogeneDB ID: | retro_dnov_987 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_130203:4279..4755(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWIIDSGAVSDWNVGRSPDPRAVSCLRNHGIK |
M.EQ..KSVLFV.L.NICRS.I.EAVFRKLVTDQNISDNW.IDS...S....G..P..........H... | |
Retrocopy | MTEQVVKSVLFVYLSNICRSLIVEAVFRKLVTDQNISDNWRIDSALTSTYEMGNPPGYQGQNFMTMHDTP |
Parental | TAHNARQITTEDFATFDYILCMDESNLRDLNNKSNRVKN-CKAKIELLGSYDPQKQ-LIIEDPYYGNDSN |
..H.A.Q.T..DFATFDYILCM...NL.DLN.K.N.VKN.CKAKIELLG.Y..QKQ..IIE.PYYGNDS. | |
Retrocopy | KKHIAQQVTKDDFATFDYILCMEVNNLTDLNRKGNQVKN<CKAKIELLGTYGTQKQIIIIENPYYGNDSD |
Parental | FETVYQQCVRCCKAFLEKSQ |
..T.YQQCVRCCK.FLE.SQ | |
Retrocopy | SKTMYQQCVRCCKPFLENSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP012922_heart | 0 .00 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .00 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .04 RPM |