RetrogeneDB ID: | retro_dnov_1499 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_21931:55556..55865(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.81 % |
Parental protein coverage: | 65.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PDPRAVSCLRNHGIKTAHNARQITT-EDFATFDYILCMDESNLRDLNNKSNRVKNCKAKIELLGSYDPQK |
PD.R...C...H.....H.A.Q.TT.EDF.TF.YI......NLRDLN...NRVKNCKA..ELL.SYDPQK | |
Retrocopy | PDYRGQNCTSKHDSRMNHIAWQVTT>EDFTTFEYIPMYG*NNLRDLNKRGNRVKNCKAQAELLRSYDPQK |
Parental | QLIIEDPY-YGNDSNFETVYQQCVRCCKAFLEKSQ |
QL.I.DP..YGNDSNF.T..QQ.VRCCKAFLEKSQ | |
Retrocopy | QLNIVDPF<YGNDSNFDTACQQWVRCCKAFLEKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP012922_heart | 0 .00 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .00 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .04 RPM |