Parental gene:

ACP1, ENSLAFG00000002966

Aliases:None
Description:None
Organism:Elephant (Loxodonta africana)
Coordinates:scaffold_20:8104752..8122447(+)


>ENSLAFG00000002966
ATGGCGGAGCAGGTCCCCAAGTCCGTGCTGTTTGTATGTCTGGGTAACATTTGTCGATCACCCATTGCAGAAGCAGTTTT
CAGAAAACTTGTAGCTGATCAAAACCTTTTAGACAAGTGGACCATTGACAGTGGTGCTGTTTCTGACTGGAACGTGGGCC
GGTCACCCGATCCAAGGGCTGTAAGCTGCCTAAGACATCATGACATTAACACAGCTCATAAAGCAAGACAGGTTACCCGA
GAAGACTTTGCCACATTCGATTATATACTATGTATGGATGAAAGCAATCTGAGAGATTTGAATAGAAAAGGTAATCAAGT
TAAGAACTGCAAAGCTAAAATCGAACTGCTTGGAAGCTATGATCCACAAAAACAGCTTGTTATTGAAGATCCCTATTACG
GGAACGACTCCGACTTCGAGACTGTGTACCAGCAGTGTGTCAGGTGCTGCAGAGCATTTTTGGAGAAGGCACACTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009554 possible_ortholog 2 retrogenes
Bos taurus ENSBTAG00000020498 possible_ortholog 4 retrogenes
Canis familiaris ENSCAFG00000030097 possible_ortholog 1 retrogene
Choloepus hoffmanni ENSCHOG00000003891 possible_ortholog 94 retrogenes
retro_chof_1010, retro_chof_1053, retro_chof_1073, retro_chof_1099, retro_chof_1100, retro_chof_1144, retro_chof_119, retro_chof_1190, retro_chof_121, retro_chof_1259, retro_chof_1265, retro_chof_1275, retro_chof_1330, retro_chof_1351, retro_chof_1359, retro_chof_1389, retro_chof_1390, retro_chof_1412, retro_chof_142, retro_chof_1444, retro_chof_1447, retro_chof_1508, retro_chof_1567, retro_chof_1570, retro_chof_1593, retro_chof_1632, retro_chof_1633, retro_chof_1658, retro_chof_1684, retro_chof_169, retro_chof_1698, retro_chof_17, retro_chof_1716, retro_chof_174, retro_chof_1799, retro_chof_1802, retro_chof_1815, retro_chof_1833, retro_chof_1838, retro_chof_1864, retro_chof_1941, retro_chof_1956, retro_chof_1993, retro_chof_2012, retro_chof_2041, retro_chof_2044, retro_chof_2091, retro_chof_2165, retro_chof_2192, retro_chof_2208, retro_chof_2228, retro_chof_2259, retro_chof_2344, retro_chof_2378, retro_chof_2384, retro_chof_2443, retro_chof_245, retro_chof_2478, retro_chof_2512, retro_chof_2532, retro_chof_2542, retro_chof_2551, retro_chof_261, retro_chof_262, retro_chof_2622, retro_chof_2636, retro_chof_2643, retro_chof_2653, retro_chof_2654, retro_chof_2678, retro_chof_2701, retro_chof_2705, retro_chof_2707, retro_chof_319, retro_chof_377, retro_chof_460, retro_chof_598, retro_chof_603, retro_chof_649, retro_chof_650, retro_chof_66, retro_chof_727, retro_chof_80, retro_chof_803, retro_chof_83, retro_chof_842, retro_chof_934, retro_chof_939, retro_chof_958, retro_chof_962, retro_chof_986, retro_chof_991, retro_chof_994, retro_chof_999,
Callithrix jacchus ENSCJAG00000011663 possible_ortholog 5 retrogenes
Cavia porcellus ENSCPOG00000002862 possible_ortholog 4 retrogenes
Dasypus novemcinctus ENSDNOG00000017382 ortholog_many2many 32 retrogenes
Dipodomys ordii ENSDORG00000016469 possible_ortholog 6 retrogenes
Equus caballus ENSECAG00000010079 possible_ortholog 1 retrogene
Erinaceus europaeus ENSEEUG00000015468 ortholog_one2one 1 retrogene
Echinops telfairi ENSETEG00000013764 ortholog_one2many 18 retrogenes
Felis catus ENSFCAG00000026717 possible_ortholog 1 retrogene
Homo sapiens ENSG00000143727 possible_ortholog 5 retrogenes
Gorilla gorilla ENSGGOG00000015577 possible_ortholog 5 retrogenes
Macropus eugenii ENSMEUG00000010733 ortholog_one2many 3 retrogenes
Myotis lucifugus ENSMLUG00000017707 possible_ortholog 4 retrogenes
Macaca mulatta ENSMMUG00000017097 possible_ortholog 2 retrogenes
Monodelphis domestica ENSMODG00000025764 ortholog_many2many 3 retrogenes
Mustela putorius furo ENSMPUG00000012787 possible_ortholog 2 retrogenes
Mus musculus ENSMUSG00000044573 possible_ortholog 11 retrogenes
Nomascus leucogenys ENSNLEG00000008359 possible_ortholog 6 retrogenes
Oryctolagus cuniculus ENSOCUG00000012876 possible_ortholog 11 retrogenes
Otolemur garnettii ENSOGAG00000000301 possible_ortholog 5 retrogenes
Procavia capensis ENSPCAG00000012054 ortholog_one2one 1 retrogene
Pongo abelii ENSPPYG00000012694 possible_ortholog 6 retrogenes
Pan troglodytes ENSPTRG00000011605 possible_ortholog 5 retrogenes
Pteropus vampyrus ENSPVAG00000013387 possible_ortholog 5 retrogenes
Rattus norvegicus ENSRNOG00000005260 possible_ortholog 11 retrogenes
Sarcophilus harrisii ENSSHAG00000005216 possible_ortholog 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000002520 possible_ortholog 3 retrogenes
Tarsius syrichta ENSTSYG00000004864 possible_ortholog 7 retrogenes
Tursiops truncatus ENSTTRG00000010770 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lafr_336 50.69 88.61
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2. retro_lafr_916 73.91 85.44
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3. retro_lafr_1053 82.28 100.00
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4. retro_lafr_1227 83.46 80.38
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Download FASTA sequences of all ENSLAFG00000002966 retrocopies