RetrogeneDB ID: | retro_ocun_1610 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018716:1438287..1438779(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000022755 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSOCUG00000012876 | ||
Aliases: | None | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 92.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LCARGKMAEPASKSVLFVCFGGNICRSPIAEAVFRKLVTDQNVSDNWRIDSAATSTYEIGNPPDYRGQEC |
LCARGKMAEPAS.SVL.VC.G.NIC.SPIA.AVFRKL.TDQNVSDNW.IDSAATSTYEIGNPPDYRGQEC | |
Retrocopy | LCARGKMAEPASRSVLGVCLG-NICQSPIAKAVFRKLLTDQNVSDNWGIDSAATSTYEIGNPPDYRGQEC |
Parental | MRRHGVPMSHVARQVTKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYY |
M.RHGVPMSH.A.QVTKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDP.KQLIIEDPYY | |
Retrocopy | MWRHGVPMSHMAQQVTKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPPKQLIIEDPYY |
Parental | GNDADFEAVYQQCVRCCRAFLEKAH |
GND.DFEAVYQQCVRCCRAFLEKAH | |
Retrocopy | GNDVDFEAVYQQCVRCCRAFLEKAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .78 RPM |
SRP017611_liver | 0 .00 RPM | 14 .80 RPM |