RetrogeneDB ID: | retro_dnov_1393 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_19442:7566..7808(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.76 % |
Parental protein coverage: | 52.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWIIDSGAVSDWNVGRSPDPRAVSCLRNHGIK |
M.EQA..S..FV.L.NIC.SPIAE.VFRKL.T.QNISDNW.IDS.A.S.......PD.....C...H.I. | |
Retrocopy | MVEQA--STCFVFLDNICQSPIAETVFRKLATNQNISDNWSIDSAATSTYAIENPPDY*G*NCMKKHDIP |
Parental | TA-HNARQITTEDF |
...H.A.Q.TTED. | |
Retrocopy | IS<HAAQQVTTEDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP012922_heart | 0 .00 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .00 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .04 RPM |