RetrogeneDB ID: | retro_chof_1524 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_31565:2..683(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSCHOG00000009977 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 95.15 % |
Parental protein coverage: | 68.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAALKDQLIENLIKEEQTPQNKITVVGVGAVGMACAISILMKELADELALVDVIEDKLKGEMMDLQHGSL |
MAALKDQLI.NLIKEEQTPQNKITVVGVGAVGMACAISILMKELADELALVDVIEDKLK.EMMDLQHGSL | |
Retrocopy | MAALKDQLIQNLIKEEQTPQNKITVVGVGAVGMACAISILMKELADELALVDVIEDKLKREMMDLQHGSL |
Parental | FLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQ-RVNIFKFIIPIAVKYSPNCKLFAVSNP- |
FLRTPKIVSGKDYSVTANSKLVIITAGA.QQEGESRLNLVQ..VNIFKFIIP..VKYSPNCKL..VSNP. | |
Retrocopy | FLRTPKIVSGKDYSVTANSKLVIITAGAHQQEGESRLNLVQHNVNIFKFIIPNVVKYSPNCKLLIVSNPV |
Parental | DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVS |
DILTYVAWKISGFPKNRVIGSGCNLDSARF.YLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVS | |
Retrocopy | DILTYVAWKISGFPKNRVIGSGCNLDSARFCYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVS |
Parental | LKNLHPELGTDADKEHW |
LKNLHPELGTDADKEHW | |
Retrocopy | LKNLHPELGTDADKEHW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |