RetrogeneDB ID: | retro_meug_1620 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold49121:9079..10078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 87.09 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
.AST.KDQLILNVLKEDQ.PQNKITVVGVGAVGMACAIS.LTKELADELALVDVIED.LKGEMMDLQHGS | |
Retrocopy | IASTFKDQLILNVLKEDQFPQNKITVVGVGAVGMACAISILTKELADELALVDVIEDTLKGEMMDLQHGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LFLKTPK.VSGKDYSVTA.SKLVIVTAGA.QQEGESRLNLVQ.NVNIFKFIIPNIVKYSPNCKLLIVS.P | |
Retrocopy | LFLKTPKMVSGKDYSVTAISKLVIVTAGAHQQEGESRLNLVQHNVNIFKFIIPNIVKYSPNCKLLIVSTP |
Parental | VDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGV |
VDILTYV.WKLSGFPK..VIGSGCNLDSA.F.YL..ERLGVHS..CHGWVLGEHGDSSVPVWSGVNLA.V | |
Retrocopy | VDILTYVTWKLSGFPKKHVIGSGCNLDSACFCYLIRERLGVHSSCCHGWVLGEHGDSSVPVWSGVNLADV |
Parental | SLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKX |
SLKNLHPSL.TDSD.ENWKDVHKQVVESAY.VI.LKGYTSWA.GLSVADLAESIMKNLRRVHPIST.IK. | |
Retrocopy | SLKNLHPSLRTDSDEENWKDVHKQVVESAYDVIRLKGYTSWATGLSVADLAESIMKNLRRVHPISTIIKA |
Parental | XXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
.......VF..V..VLGQNGISDVV.VNLN.EEES.LKKS..TLWGIQKELQF | |
Retrocopy | LYGINEDVFLTVPCVLGQNGISDVVEVNLNLEEESYLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |