RetrogeneDB ID: | retro_meug_1404 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold39341:6746..7739(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 66.77 % |
Parental protein coverage: | 98.8 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | STVKDQLILNVLKEDQV-PQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGSL |
.T.K..LI..V..E....P.NKITVVGVG.VGMACAIS.L.K.LADELALVDV.EDKL.GEMMDLQHG.L | |
Retrocopy | ATLKEKLIVPVAEEEAAAPNNKITVVGVGQVGMACAISILAKSLADELALVDVLEDKLEGEMMDLQHGGL |
Parental | FLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNPV |
FL.TPKIVS.KDYSVTA.SK.V.VTAG.RQQEGES.LN.VQRNVN.FKFIIP.IVKYSP.C....VSN.V | |
Retrocopy | FLQTPKIVSDKDYSVTAGSKIVVVTAGVRQQEGESHLNMVQRNVNVFKFIIPQIVKYSPDCIIIVVSN*V |
Parental | DILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVS |
DILTYV.WKL.G.PK..VIGSGCNLDSARF.YLM.E.LG.H..SCHGWVLGEHGDSSV.VW.GVN.AGVS | |
Retrocopy | DILTYVTWKLNGLPKHWVIGSGCNLDSARFHYLMSEKLGIHPSSCHGWVLGEHGDSSVAVWNGVNVAGVS |
Parental | LKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXX |
L..L.P..GT..D.ENWK.VH..V.ESA.EV..LKGYT.WAIGLSVADL.E...KNL...HP.ST..K.. | |
Retrocopy | LQDLNPEMGTGNDSENWKEVHELVIESA*EVTRLKGYTNWAIGLSVADLIETMLKNLSKIHPVSTVVKGM |
Parental | XXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQ |
......VF.S....L...G...V....L...E...LKKS..TLW.IQK.L. | |
Retrocopy | YGIENEVFLSLPSILNA*GLISVINQKLKDDEVAQLKKSADTLWDIQKDLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |