RetrogeneDB ID: | retro_meug_532 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold131881:1406..2046(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 75. % |
Parental protein coverage: | 64.37 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MASTVKDQLILNVL-KEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHG |
.ASTVKDQLILNVL......P.......G...V..A.....L...LADELALVDVIEDKLK..M..LQHG | |
Retrocopy | IASTVKDQLILNVL>RKTRFPKTRPLLLGL--VQLAWHVP*LS*QLADELALVDVIEDKLKETMINLQHG |
Parental | SLFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSN |
.LFLK.PKIVSGKDY.VTANSKLV.V..GA.QQEGES.LNL...NVNIFKFIIPNIVKYSPNCK.LIVSN | |
Retrocopy | NLFLKIPKIVSGKDYCVTANSKLVMVMTGACQQEGESCLNLF*HNVNIFKFIIPNIVKYSPNCKQLIVSN |
Parental | PVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAG |
PVDILTYVAWKL.GFPKN.VIGS.CNL.S..FR.LMGER.G.HS.SCHGW.LGEHGDSSVPVWSGVNLAG | |
Retrocopy | PVDILTYVAWKLNGFPKNHVIGSSCNLVSVHFR*LMGERPGIHSSSCHGWHLGEHGDSSVPVWSGVNLAG |
Parental | VSLKNL |
VSLKNL | |
Retrocopy | VSLKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |