RetrogeneDB ID: | retro_meug_1162 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold31143:12181..13171(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 71.94 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
M...VKDQLI.NVLKEDQV..NKIT.VGVGAVGMA.AIS.L.K.LADELALVD..EDK.K..MM.LQ.GS | |
Retrocopy | MGTFVKDQLIVNVLKEDQVSHNKITLVGVGAVGMAWAISTLMKDLADELALVDAKEDKIKEDMMNLQQGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LFL.TPKIVSGKDYS.TA.SKLV.VT.GA.QQEGES.LNLVQ.NVNIFKFIIPNI.KYSPNCKLLIV.NP | |
Retrocopy | LFLNTPKIVSGKDYSGTAKSKLVVVTTGAHQQEGESHLNLVQHNVNIFKFIIPNIIKYSPNCKLLIVYNP |
Parental | VDILTYVAWKLSGFPKNRVIG-SGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLA- |
VDIL.YVA.KLSGFPKNR..G.SGCN.DS..F.YL.G.R.G.HS.SC.G.VLGEH.DS.VP...GVN... | |
Retrocopy | VDILIYVA*KLSGFPKNRSYG>SGCNPDSVCFCYLIGKRVGIHSSSCNG*VLGEHEDSRVP---GVNAV< |
Parental | GVSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMI |
G.........LGTD...EN.KDVHK.V.E.AY.VIKLKGYTSWAI.L..ADLAESIMKNLR..HPISTMI | |
Retrocopy | GLCKESFYTALGTDANSEN*KDVHK*VAERAYAVIKLKGYTSWAIDLCEADLAESIMKNLRAAHPISTMI |
Parental | KXXXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
K.........F.SV...LGQNGISDVVK..LN.EEE.HLKKS..TLWG.QKELQF | |
Retrocopy | KDLCGINEDFFLSVLCILGQNGISDVVKIKLNPEEEGHLKKSKDTLWGLQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |