RetrogeneDB ID: | retro_chof_1489 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_30647:5296..6217(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSCHOG00000009977 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 91.56 % |
Parental protein coverage: | 92.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAALKDQLIENLIKEEQTPQNKITVVGVGAVGMACAISILMKELADELALVDVIEDKLKGEMMDLQHGSL |
MAALKDQLI.NLIKEEQTPQNKITVVGVGAVGMACAISILMKELADELALVDVIEDKLKGEMMDLQHGSL | |
Retrocopy | MAALKDQLIQNLIKEEQTPQNKITVVGVGAVGMACAISILMKELADELALVDVIEDKLKGEMMDLQHGSL |
Parental | FLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQ-RVNIFKFIIPIAVKYSPNCKLFAVSNP- |
FLR.PK..SGKDYSVTANSKLVIITAGARQQEGES.LNLVQ..VNIFK.IIP..VKYSPNCK...VSNP. | |
Retrocopy | FLRAPKVFSGKDYSVTANSKLVIITAGARQQEGESHLNLVQCNVNIFKVIIPNVVKYSPNCKFLIVSNPV |
Parental | DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVS |
DILTYVA.KISGFPKNRVIGSGCNLDSARFRYL.GERLGVHP.SCHGWVLGEHGDSSVPVWS.VNVAGVS | |
Retrocopy | DILTYVACKISGFPKNRVIGSGCNLDSARFRYLTGERLGVHPISCHGWVLGEHGDSSVPVWSEVNVAGVS |
Parental | LKNLHPELGTDADKEHWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTLIK-L |
LKNLHPELG.DADKEHWKEVHKQVVDSA..VIKLKGYTSWAIGLSV.DLAESIMKNLRRVHPVSTLIK.L | |
Retrocopy | LKNLHPELGSDADKEHWKEVHKQVVDSA-*VIKLKGYTSWAIGLSVVDLAESIMKNLRRVHPVSTLIKGL |
Parental | YGIKDDVFLSVPCILGQNGISDIIKVTL |
YGIKDD.FLSVPCILGQNGISDI.KV.L | |
Retrocopy | YGIKDDIFLSVPCILGQNGISDIVKVSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |