RetrogeneDB ID: | retro_meug_867 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold21209:3852..4616(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 82.17 % |
Parental protein coverage: | 76.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | VSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVA |
VSGKDYSVTAN.KL.I..A.A.QQEGES.LNLVQ.NVNIFKFIIPNI.KYSPNCKLLIV.NPVDILTYVA | |
Retrocopy | VSGKDYSVTANLKLIIAIARAHQQEGESHLNLVQHNVNIFKFIIPNIFKYSPNCKLLIVFNPVDILTYVA |
Parental | W-KLSGFPK-NRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLH |
W.KLS.FPK....IGS.CNLDSARF.YLM..RLGVHS.SCHG.V.GEHGDSSVPVWS.VNLAGVSLK.LH | |
Retrocopy | W>KLSDFPK<TYIIGSCCNLDSARFHYLMEKRLGVHSSSCHGGVIGEHGDSSVPVWSCVNLAGVSLKTLH |
Parental | PSLGTDSDAENWKDVHK-QVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXX |
PSLG.D.DAENWKDVHK..VVESAYEVIKLKGYTSWA.GLSVADL.ES.MKNLRRVHPISTMIK...... | |
Retrocopy | PSLGNDADAENWKDVHK<IVVESAYEVIKLKGYTSWATGLSVADLPESSMKNLRRVHPISTMIKGLYGIS |
Parental | XXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
..VF.SV..VLGQNGISDVVKVNLN.EEESHLKKS..TLWGIQKELQF | |
Retrocopy | EDVFLSVPCVLGQNGISDVVKVNLNPEEESHLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |