RetrogeneDB ID: | retro_cpor_427 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_15:38605494..38606402(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSCPOG00000011926 | ||
Aliases: | None | ||
Description: | L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:H0VKB0] |
Percent Identity: | 65.2 % |
Parental protein coverage: | 91.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 10 |
Parental | FGSKSKM-ASLKDQLIVNLLKEEQVPQNKITVVGVGAVGMACAISILMKD-LADELALVDVM-EDKLKGE |
FGSK.K..ASLK..L.VNLLKE.QVP.N.IT.V.VG...MA.....LM.D..A.E.A..D.M.EDKLKGE | |
Retrocopy | FGSKPKR<ASLKGKLTVNLLKERQVPWNRITIVRVGTAAMAYSVTTLMED<WANEVAIADIM<EDKLKGE |
Parental | MMDLQHGSLFLRTPKI-VSGKDYNVTANSKLVIITAGARQQEGE-SRLNLVQRNVNIFKFIIPNVVKYS- |
M.DLQ.GS.FLRTPK...SGKDYN.TANS.L.I.TAGA.QQE.E.S.LNLV..N.NIFK.IIP.V.K.S. | |
Retrocopy | MTDLQPGSVFLRTPKL<LSGKDYNRTANSRLIITTAGAQQQETE<SHLNLVPCNGNIFKLIIPDVIKLS< |
Parental | PNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM-GERLGVHPLSCHG-WILGEHGDS |
PNC.LLVVSNPVD.LTY...KIS.FPK...IGSGCNLDSA.F.YLM.G..LG..PLSCH..WIL.EHG.S | |
Retrocopy | PNCELLVVSNPVDLLTYED*KISDFPKTCDIGSGCNLDSAWFCYLM<GGKLGIQPLSCHS<WILKEHGKS |
Parental | SVPVWSGVNVAGVALKNLHPELGTDGDKEHWKEVHKQVVDSAYEVIKLKGYTSWAIGLSV-ADLAESIMK |
..PVWSGVN.A.V..K...P..........WKE.HKQV.DSAY..I.LKG.TSWA.GLSV.ADL...... | |
Retrocopy | VTPVWSGVNAADVSEKSA-PRVRH*WEQGDWKELHKQVADSAYKEIELKGHTSWAMGLSV<ADLTK--FN |
Parental | NLRRVHPISTMIKGLY-GIKDDVFLSVPCVLGQNGISDV |
.LRRVHP.STMIKGL..GI.DDVFLSVPCVL.QN.IS.V | |
Retrocopy | KLRRVHPTSTMIKGLW<GIGDDVFLSVPCVLRQNEISYV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .89 RPM | 123 .95 RPM |
SRP017611_kidney | 12 .25 RPM | 32 .24 RPM |
SRP017611_liver | 5 .09 RPM | 80 .22 RPM |
SRP040447_lung | 6 .31 RPM | 133 .24 RPM |
SRP040447_skeletal_muscle | 0 .10 RPM | 833 .77 RPM |