RetrogeneDB ID: | retro_meug_572 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold138795:1568..2156(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 79.19 % |
Parental protein coverage: | 58.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
MASTVK.QLI.NVLKEDQVP.NKITV.GV.AVGM.CAIS.LTK.L.DELAL.DVIEDK.KGEMMDL..GS | |
Retrocopy | MASTVKNQLIVNVLKEDQVPHNKITVAGVNAVGMSCAISILTKDLTDELALLDVIEDKPKGEMMDLHPGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LFLK.P.IVSGK.YSVTA.SKLVIV..GA.QQEGES.LNLVQ.NVNIFKFIIPNI.KYSPNC.L.I.SNP | |
Retrocopy | LFLKMPMIVSGKHYSVTADSKLVIVVTGACQQEGESLLNLVQHNVNIFKFIIPNI-KYSPNCRLCILSNP |
Parental | VDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDS |
.DIL.YVAWKL.GFPKNRVIGSG...DS..F..LM.ERLGVHS..CH.WV.GEHGDS | |
Retrocopy | GDILIYVAWKLNGFPKNRVIGSG*KMDSTHFC*LMRERLGVHSSYCHSWVFGEHGDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |