RetrogeneDB ID: | retro_meug_1781 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold588598:231..745(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 91.38 % |
Parental protein coverage: | 51.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PQNKITV-VGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSGKDYSVTA |
PQNKITV.VGVGAVGMACAIS.LTKELADELAL.DVIEDKLKGEMMDLQHG.LFLK.PKIVSGKDYSVTA | |
Retrocopy | PQNKITV<VGVGAVGMACAISILTKELADELALIDVIEDKLKGEMMDLQHGGLFLKMPKIVSGKDYSVTA |
Parental | NSKLVIVTAGARQQEGESRLNLV-QRNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVAWKLSGFPKN |
NSKL.IVTAGA.QQEGES.LNLV.Q.NVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVAWKLSGFPK. | |
Retrocopy | NSKLIIVTAGAHQQEGESHLNLV<QHNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVAWKLSGFPKH |
Parental | RVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVL |
.VIGSGCN.DSA.F.YLMGERLGVHSLSCHGWVL | |
Retrocopy | HVIGSGCNMDSACFHYLMGERLGVHSLSCHGWVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |