RetrogeneDB ID: | retro_meug_1875 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold67889:1425..2175(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 83.2 % |
Parental protein coverage: | 74.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVAWKLSG |
YSVTANSKLVIV.A.A.QQEGES.LNLVQRNVNIFKFII.NIVKYSPNCKLLIVSNPVDIL.YVAWKLS. | |
Retrocopy | YSVTANSKLVIVMAEACQQEGESHLNLVQRNVNIFKFIISNIVKYSPNCKLLIVSNPVDILKYVAWKLSD |
Parental | FPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTDS |
.PKN.VIGSGCNLDSA.F.YLMGER.GVHS.SCHGWVLGEHG.SSVPVWSGVNL..VSLKNLHPSLGTD. | |
Retrocopy | SPKNCVIGSGCNLDSACFHYLMGERFGVHSSSCHGWVLGEHGGSSVPVWSGVNLTVVSLKNLHPSLGTDA |
Parental | DAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXXXXVFHSVS |
.AENWKDVHK..VESA.EVIKLKGYTSWAIGL.VADL.ESIMKNLR.V.PISTMIK........VF.SV. | |
Retrocopy | YAENWKDVHKHLVESACEVIKLKGYTSWAIGLFVADLSESIMKNLRGVYPISTMIKGLYGINEDVFLSVP |
Parental | YVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
.VLGQN.ISDVVKVNLN.EEES.LKKST..LW.IQKELQF | |
Retrocopy | CVLGQNDISDVVKVNLNPEEESRLKKSTDILWRIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |