RetrogeneDB ID: | retro_meug_1288 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold354456:263..923(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 69.2 % |
Parental protein coverage: | 65.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KLKGEMMDLQHGS-LFLKTPKIVSGKDYSVTA-NSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNI |
KLK.EMM.LQH.S.LFL.TPK....K.YSVTA.NS.L..V.AG..QQEG.S.LNLV..NVNIFKFIIPN. | |
Retrocopy | KLKREMMHLQHSS<LFLRTPKTACDKNYSVTA<NSELAVVMAGTHQQEGGSHLNLV*NNVNIFKFIIPNR |
Parental | VKYSPNCKLLIVSNPVDI-LTYVA-WKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGE |
VKY.PNCKLL..SN.....LTY....K.SGFPKN.VIGSGCNL..A.F.YLMGE.L.VHS.SC.GWV.GE | |
Retrocopy | VKYRPNCKLLTISNSTGF<LTYDT*HKPSGFPKNNVIGSGCNLYPAGFHYLMGEGLSVHSSSCQGWVFGE |
Parental | HGDSSVPVWSGVNLAGVSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAES |
HGD.SVPV.SGVN.A.V.LKNL.P.LGT..D...WKDV..QVVESA.E.IKLKGYTS.A.G.SV.DL.E. | |
Retrocopy | HGDCSVPVCSGVNVASVPLKNLYPALGTYAD*KHWKDVYTQVVESAHEMIKLKGYTSLATGTSVEDLIEN |
Parental | IMKNLRRVHPISTM |
IMKNL.RVHPIST. | |
Retrocopy | IMKNLKRVHPISTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |