RetrogeneDB ID: | retro_vpac_79 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1601:496058..496606(-) | ||
Located in intron of: | ENSVPAG00000006545 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSVPAG00000010215 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 80.43 % |
Parental protein coverage: | 54.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VGVGAVGMACAISILMK-LADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVIIT |
.GV.AVGM.CAISILMK..ADE.AL.DVMEDKLKGEMMDLQHGSLFLRTPK.VSGKDYNVTANSRLVIIT | |
Retrocopy | LGVCAVGMPCAISILMKDIADEIALTDVMEDKLKGEMMDLQHGSLFLRTPKTVSGKDYNVTANSRLVIIT |
Parental | AGARQQEGESRLNLVQRNVNIFKFI-IPNVVKYSPNCKLLVVSNP-DI-LTYVA-KISGFPKNRVIGSGC |
A.A.QQEGES.LNLVQ.NVNIFKFI..PN.V.YSPNCKLLVVSNP.DI.LTYVA.K..GFP.N.VIGSG. | |
Retrocopy | AVAHQQEGESHLNLVQHNVNIFKFI<LPNIVMYSPNCKLLVVSNPVDIFLTYVAGKMNGFPQNHVIGSGY |
Parental | NLDSARFRYVMGERLGVH-PLSCHGWILGEHGDSSVPVWSGINV |
NLDSA.F.Y.MGERLG...PLSCHGW..GEH.DSSVPV.S..NV | |
Retrocopy | NLDSAQFCYLMGERLGAFTPLSCHGWVPGEHKDSSVPV*SRVNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |