RetrogeneDB ID: | retro_meug_1420 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold39739:6207..7200(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 75.82 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MASTVKDQLILNVL-KEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHG |
MAST.KDQLILNVL......P......VGVGAVGMA.AIS..TK.L.DELALVD.IEDKLKGEM..LQHG | |
Retrocopy | MASTFKDQLILNVL>RKTRFPRTG-ALVGVGAVGMAYAISIFTKDLTDELALVDGIEDKLKGEMITLQHG |
Parental | SLFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSN |
SLFLK.PKIVS.KDYS.TANSKLVIVTA..RQQEGES.LNLVQ.NVNIFKFIIPNIVKYSPNCKLLIVSN | |
Retrocopy | SLFLKMPKIVSSKDYSMTANSKLVIVTAETRQQEGESHLNLVQHNVNIFKFIIPNIVKYSPNCKLLIVSN |
Parental | PVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAG |
...IL.YVAWKLSGFP.N.VIGSGCNLDSA.F.Y.MGE.L..HS..CHGWVLGEHGDSS.PVWS.VNLA. | |
Retrocopy | SMAILIYVAWKLSGFPNNHVIGSGCNLDSAHFCYPMGEGLSFHSSRCHGWVLGEHGDSSIPVWSSVNLAS |
Parental | VSLKNLHPS-LGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMI |
V.LKNLHP..L.TD.D.ENWKD.HK..VESA.EVIKLKGYT.WAIGLSVADL.ESIM.NLRR.HP.STMI | |
Retrocopy | VALKNLHPA<LETDADLENWKDAHK*MVESA*EVIKLKGYTFWAIGLSVADLVESIMENLRRGHPLSTMI |
Parental | KXXXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
K........VF.S....L.QNGISD.VKVNLN...E.HLKKST.TLWGIQKE.QF | |
Retrocopy | KGLDGINVDVFLSAPCILWQNGISDEVKVNLNL-KENHLKKSTDTLWGIQKEMQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |