RetrogeneDB ID: | retro_meug_1906 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold709:76966..77954(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 66.27 % |
Parental protein coverage: | 98.8 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | STVKDQL-ILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGSL |
.T.K..L..L....E...P.NKITVV.VG.VGMACAIS.L.K.LADELALVDV.EDKLKGEMMDLQHGSL | |
Retrocopy | ATLKEKL<VLVAEEEAAAPNNKITVVSVGQVGMACAISILAKSLADELALVDV*EDKLKGEMMDLQHGSL |
Parental | FLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNPV |
FL.T.KIV..KDYSVTA.SK.V.VTA...QQEGE..LNLVQRNVN.FKF.IP.IVKYSP.C....VSNP. | |
Retrocopy | FLQTLKIVADKDYSVTAGSKIVVVTARVHQQEGENCLNLVQRNVNVFKFFIP*IVKYSPDCIIIVVSNPI |
Parental | DILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVS |
DILTYV.WKLSG.PK..VIGSGCNLDSARFRYLM.E.LG.H..SCHG..LGEHGDSSV.VWSGVN.A... | |
Retrocopy | DILTYVTWKLSGLPKPQVIGSGCNLDSARFRYLMSE*LGIHPSSCHGSILGEHGDSSVAVWSGVNVARIY |
Parental | LKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXX |
L..L.P..GTD.D.ENWK.VHK.V.ESAYEVIKLKGYT.WAIGLS.ADL.E...KNL...HP.STM.K.. | |
Retrocopy | LQDLNPEMGTDNDSENWKEVHKLVIESAYEVIKLKGYTNWAIGLSIADLIETMLKNLSKIHPVSTMVKGM |
Parental | XXXXXXVFHS-VSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQ |
......VF.S..S..L...G...V....L...E...LKKS..TLW.IQK.L. | |
Retrocopy | YGIEN*VFLS<LSMHLNARGLTSVINQKLKNDEVAQLKKSADTLWDIQKDLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |