RetrogeneDB ID: | retro_meug_1674 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold52315:7628..8143(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 72.99 % |
Parental protein coverage: | 51.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | GFPKNRVIGSGCNLDSARFRYL-MGERLGVHSLSCHGWV-LGEHGDSSVPVWSGVNLAGVSLKNLHPSLG |
GFPKN.VIGSGC.LDSA.F.Y...GE.LGV.S..CHGWV.LG..GDSSV.V.S.V.LAGVSLKNLHP.L. | |
Retrocopy | GFPKNCVIGSGCKLDSACFLYV>LGEKLGVCSSNCHGWV>LG-NGDSSVLV*SSVKLAGVSLKNLHPLLE |
Parental | TDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXXXXVFH |
.D...EN.KDVHKQ.VES.Y.VIKLKGYTS...GLSVADLAESIMK.LRRVHPISTMIK........VF. | |
Retrocopy | IDANSEN*KDVHKQMVESTYKVIKLKGYTS*VTGLSVADLAESIMKILRRVHPISTMIKGLFGINEDVFL |
Parental | SVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTL |
SV..VLGQN..SDVVKVNLN.EEESHLKKST.TL | |
Retrocopy | SVPCVLGQNDLSDVVKVNLNLEEESHLKKSTDTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |