RetrogeneDB ID: | retro_meug_927 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold235065:1202..1810(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 78.16 % |
Parental protein coverage: | 60.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LADELALV-DVIED-KLKGEMMDL-QHGSLFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLV |
LAD.LAL..DV..D..LKGEMMDL.QHGSLFLK..KIVSGKDY.VTANSK.VIV.AGA.Q..GES.LNLV | |
Retrocopy | LADGLALM<DVVGD<QLKGEMMDL>QHGSLFLKMTKIVSGKDYNVTANSKPVIVMAGACQ*KGESHLNLV |
Parental | QRNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGV |
Q.NVNIFKFII..IV.YSPNCKLLIVSNPVDILTYVAWKLSGFPKN..IGSGCNLDS..F.YLMGER.GV | |
Retrocopy | QCNVNIFKFIISYIVIYSPNCKLLIVSNPVDILTYVAWKLSGFPKNHIIGSGCNLDSTYFCYLMGERHGV |
Parental | HSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKG |
HS.SC.GWVL.EH.DS.VPV....NLA.V.LKN.HPSLGTD...ENWKDVH.QVVESAYEVIK..G | |
Retrocopy | HSSSCQGWVLREHEDSIVPV*NSMNLAIVFLKNFHPSLGTDANVENWKDVHRQVVESAYEVIKFPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |