RetrogeneDB ID: | retro_meug_291 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_968:8394..8901(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 81.18 % |
Parental protein coverage: | 50.9 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | CNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTDSDAENWKDVHK |
CNLDSA.F.YLMGERLGVHS.S.HG.VLGEH.DSS..V.S.VNLA.VSLKNLHPSLG...D.ENWKDVHK | |
Retrocopy | CNLDSAHFHYLMGERLGVHSSSYHG*VLGEHRDSSISV*SSVNLADVSLKNLHPSLGI-ADVENWKDVHK |
Parental | QVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXXXXVFHSVSYVLGQNGISD |
QVV.SAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIK........VF.SV..VLGQNGISD | |
Retrocopy | QVV*SAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGVNEDVFLSVPCVLGQNGISD |
Parental | VVKVNLNTEEESHLKKSTYTLWGIQKELQF |
VVKVNL..EE.SHLKKS..TLWGIQKELQF | |
Retrocopy | VVKVNLIREEKSHLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |