RetrogeneDB ID: | retro_ptro_1618 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2A:85958490..85959318(-) | ||
Located in intron of: | ENSPTRG00000012125 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSPTRG00000003421 | ||
Aliases: | LDHA, LDHC | ||
Description: | Pan troglodytes lactate dehydrogenase A (LDHA), mRNA. [Source:RefSeq mRNA;Acc:NM_001034096] |
Percent Identity: | 86.38 % |
Parental protein coverage: | 84.04 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | IEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPN |
..DKLKGEMMDL.HGS.FLRTPKIVSGKDYNVTANSKLVIITA.A..QEGESRLNLVQ.NVNIFKFIIPN | |
Retrocopy | LQDKLKGEMMDL*HGSFFLRTPKIVSGKDYNVTANSKLVIITAWACEQEGESRLNLVQPNVNIFKFIIPN |
Parental | VVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH |
VVKYS.NC.LLIVSNPVDILTYVAWKI.GFPKN..IGSGCNLDSA.FRYLMGERLGVHPLSCHGWVLGE. | |
Retrocopy | VVKYSTNCNLLIVSNPVDILTYVAWKINGFPKNCIIGSGCNLDSA*FRYLMGERLGVHPLSCHGWVLGER |
Parental | GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESI |
GDSSVPVWSG.NVA.VSLKTLHPDLGTD.DK.QWKEVH..VVESAYEVIKLKG...W.IG.SVADLAESI | |
Retrocopy | GDSSVPVWSGVNVADVSLKTLHPDLGTDTDK*QWKEVHM*VVESAYEVIKLKG---WDIGPSVADLAESI |
Parental | MKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQF |
MKNLRRVH..STMIKGLYGIKD.VFL.VPCILGQNGISDLVKV.LT.EEE..LKKSA.TLWGIQK...F | |
Retrocopy | MKNLRRVHLISTMIKGLYGIKDNVFLNVPCILGQNGISDLVKVSLTPEEEICLKKSAVTLWGIQKTCNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 183 .18 RPM |
SRP007412_cerebellum | 0 .00 RPM | 126 .72 RPM |
SRP007412_heart | 0 .09 RPM | 236 .70 RPM |
SRP007412_kidney | 0 .05 RPM | 251 .34 RPM |
SRP007412_liver | 0 .07 RPM | 434 .12 RPM |
SRP007412_testis | 0 .11 RPM | 259 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2285 |
Gorilla gorilla | retro_ggor_1698 |
Macaca mulatta | retro_mmul_1037 |