RetrogeneDB ID: | retro_meug_1332 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold3704:4437..5437(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 84.43 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
MASTVKDQLILNVLKEDQVPQNKI.VVGVGAVGMACAIS.LTKELADELALVDVIEDKLKGEMMDLQHGS | |
Retrocopy | MASTVKDQLILNVLKEDQVPQNKIIVVGVGAVGMACAISILTKELADELALVDVIEDKLKGEMMDLQHGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LFLK.PKIVSGKDYSVTANSKLVIVTA...Q.EGES.L.LVQ.N.NI.KFIIPNIVKYSPN.KLLIVSNP | |
Retrocopy | LFLKMPKIVSGKDYSVTANSKLVIVTAETCQHEGESCLHLVQCNANILKFIIPNIVKYSPNFKLLIVSNP |
Parental | VDILTYVAWKLS-GFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAG |
VDILTYVA.....GFPKN.VI.SGCNLDSA.F.YL.GERLGVH..SCH.WVL.EHGDSSVPVWSGVNLA. | |
Retrocopy | VDILTYVAXXXX>GFPKNCVIESGCNLDSAHFCYLIGERLGVHFSSCH*WVLREHGDSSVPVWSGVNLAS |
Parental | VSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIK |
.SLKNLHPSLGTD.DAE.WK.VHKQVVES.Y.VIKLKGYTSWAIGLS.ADLAESIMKNLRRVHPIS.MIK | |
Retrocopy | LSLKNLHPSLGTDADAEYWKVVHKQVVESPYKVIKLKGYTSWAIGLSDADLAESIMKNLRRVHPISSMIK |
Parental | XXXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
.........F.SV..VLGQNGISDVVKVNLN.EEES.LKKS..TLWGIQKELQF | |
Retrocopy | GLYGINEDIFLSVP*VLGQNGISDVVKVNLNLEEESYLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |