RetrogeneDB ID: | retro_meug_1368 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold382678:1..579(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 77.55 % |
Parental protein coverage: | 58.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLA |
N.VD.LT.VA.KLSGFPKN..IGSG.NLDSA.F.YLMGERLG.H..SCHGWVLGEHGDS.VPVW.G.NLA | |
Retrocopy | NSVDTLTHVALKLSGFPKNCIIGSG*NLDSACFHYLMGERLGFH*SSCHGWVLGEHGDSNVPVWNGLNLA |
Parental | GVSLKNLHPSLGTDSDAENWKDV-HKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTM |
GVSLKNLHP.L.TD.D.ENWKDV.HKQVVE.AYEVIKLKGYTSWAIGLSVADLAESI.KNLR...PISTM | |
Retrocopy | GVSLKNLHPPLRTDADPENWKDV<HKQVVEIAYEVIKLKGYTSWAIGLSVADLAESIVKNLRFL-PISTM |
Parental | IKXXXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
IK.........F.S...VLGQNGISDVVKVN.N..EESHLKKS..TLWGI.KELQF | |
Retrocopy | IKGLYGIHEDIFLSGPCVLGQNGISDVVKVNQNL-EESHLKKSADTLWGIRKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |