RetrogeneDB ID: | retro_meug_2000 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold78198:13115..13766(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 89.09 % |
Parental protein coverage: | 65.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
MASTVKDQLI.NVLK.DQVPQNKITVVGVGAV.MAC.IS.LTKELADELALVDVIEDKLKGEMMDLQHGS | |
Retrocopy | MASTVKDQLISNVLKKDQVPQNKITVVGVGAVDMACVISILTKELADELALVDVIEDKLKGEMMDLQHGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LFLKTPK.VS....SVTANSKLVIVTA.ARQQEGES.LNLVQ.NVNIFKFIIPNIVKYSPNCKLL..SN. | |
Retrocopy | LFLKTPKTVSD---SVTANSKLVIVTAEARQQEGESHLNLVQCNVNIFKFIIPNIVKYSPNCKLLTFSNL |
Parental | VDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGV |
VDILTYVAWKLSGFPKNRVIGSGCNLDSA.F.YLM.ERLGVHS.SC.GWVLGE.GDSSVPVWS.VNLAGV | |
Retrocopy | VDILTYVAWKLSGFPKNRVIGSGCNLDSAHFHYLMEERLGVHSSSCRGWVLGELGDSSVPVWSDVNLAGV |
Parental | SLKNLHPSLG |
SLKNL.PSLG | |
Retrocopy | SLKNLYPSLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |