RetrogeneDB ID: | retro_meug_1824 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold62554:593..1521(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 71.88 % |
Parental protein coverage: | 93.11 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | KITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSGKDYSVTANSKL |
K.TV.G.GA.GMACAIS.LTK.LADE.A..D.IEDKL.GEMMDLQHGSLFLK.PKIVS.KDYSVTANSKL | |
Retrocopy | KMTVLGIGAIGMACAISILTKDLADEFA*FDIIEDKLNGEMMDLQHGSLFLKMPKIVSSKDYSVTANSKL |
Parental | VIVTAGARQQEGESRLNLVQ-RNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVAWKLSGFPKNRVIG |
V.V.AGARQQ.GES..NL.Q..NVNIFKFIIPNIVKY.PNCKLL.V...VDI.....WKLSGFPKN.V.G | |
Retrocopy | VMVMAGARQQQGESCFNLLQ<GNVNIFKFIIPNIVKYCPNCKLLTVFKSVDISISMPWKLSGFPKNCVVG |
Parental | SGCNLDSARFRYLM-GERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTDSDAENWKD |
SGCNL..A.F.YLM..ERLGVHS.SC..W.LG.HGDSSV..WSGVN.AGVSLKNL..SLGTD.D.ENWKD | |
Retrocopy | SGCNLHAASF*YLM<EERLGVHSSSCYEWFLG*HGDSSVLIWSGVNVAGVSLKNLRLSLGTDADLENWKD |
Parental | VHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXXXXVFHSVSYVLGQNG |
VHKQV.ESAYEVIKLK.YTSWAI..S.....ES.MKNLR.VHPI..MIK........VF.SV...LGQNG | |
Retrocopy | VHKQVIESAYEVIKLKDYTSWAI-VSLWHRVESTMKNLRQVHPIPNMIKELYGINEDVFLSVPCILGQNG |
Parental | ISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
ISDV.KVNL..EE....KKS..TLWG.Q..LQF | |
Retrocopy | ISDV*KVNLYLEEKTCSKKSADTLWGAQNKLQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |