RetrogeneDB ID: | retro_meug_1779 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold5847:31937..32928(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 76.79 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGM-ACAISVLTKELADELALVDVIEDKLKGEMMDLQHG |
MASTVKD.LI...LKEDQV.QNKITVVGVGAVG..ACAIS.L.K.LADE.ALVDVIE.K.KG.MMDL.HG | |
Retrocopy | MASTVKD*LI---LKEDQVTQNKITVVGVGAVGL>ACAISILRKHLADEVALVDVIENKVKGKMMDLRHG |
Parental | SLFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSN |
SLF.K.P.I.SGKD.SVTANSKLVI...G..QQEG.S.LNL...NVNIFKFIIPNIVK.S.NCK.LIVSN | |
Retrocopy | SLFGKAPNIASGKDCSVTANSKLVIIMDGDCQQEGKSFLNLILCNVNIFKFIIPNIVKHSLNCKVLIVSN |
Parental | PVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMG-ERLGVHS-LSCHGWVLGEHGDSSVPVWSGVNL |
.VDILTYVA.KLS.FPKN.VIGSGC.LDSA.F.YLMG.ERLGVHS...CHGW.LGEHGDSSVPV.S.VNL | |
Retrocopy | AVDILTYVAQKLSDFPKNCVIGSGCILDSAHFHYLMG>ERLGVHS<FNCHGWILGEHGDSSVPV*SSVNL |
Parental | AGVSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTM |
.GV.L.NLHPSLGTD.D.EN.KDVHKQV.ES.Y.VIKLK.YTSWA.GL.V.DLAESIMKNLRRVHPIST. | |
Retrocopy | SGVFLQNLHPSLGTDDDSENFKDVHKQVAESVYKVIKLKSYTSWATGLLVEDLAESIMKNLRRVHPISTL |
Parental | IKXXXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
IK........VF.S...VLGQNGISDVVK.NLN.EEES.LKKS..TLWGIQKELQF | |
Retrocopy | IKGLYSINEDVFLSAPFVLGQNGISDVVKANLNLEEESYLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |