RetrogeneDB ID: | retro_meug_1685 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold52932:3085..4080(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 81.08 % |
Parental protein coverage: | 99.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
M.S.VKDQLILNVLKEDQVPQ.KITVVGVG.VGMACAI..LTKELADELALVDVIEDKLKG.MMDLQHGS | |
Retrocopy | MSSAVKDQLILNVLKEDQVPQKKITVVGVGTVGMACAITILTKELADELALVDVIEDKLKGKMMDLQHGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LF.K.PKI..GKDYSV..NSKLVIVTAG..QQEGES.LNLVQ.NVNIFKFIIPNIVKYS.NCK.LIVSNP | |
Retrocopy | LFIKMPKIFPGKDYSVSVNSKLVIVTAGTHQQEGESHLNLVQCNVNIFKFIIPNIVKYSCNCKMLIVSNP |
Parental | VDI-LTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAG |
VDI.L.YVAWKLSGF.KN..IGSGCNL.SA.F.YLMGERLGVHS.SCHGWVLGEHGDS.VPVWSGVNLA. | |
Retrocopy | VDI<LIYVAWKLSGFTKNSIIGSGCNLNSAHFCYLMGERLGVHSSSCHGWVLGEHGDSNVPVWSGVNLAD |
Parental | VSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIK |
VSLKNLHPSLGTD.D.ENWKDV.KQV.ESA.EVI.LKGYTSWAIGLSVAD..E.I.KNLRRVH.I.TMI. | |
Retrocopy | VSLKNLHPSLGTDADIENWKDVRKQVLESANEVIQLKGYTSWAIGLSVADIEERIKKNLRRVHTIFTMIR |
Parental | XXXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQ |
........VF.SV..VLGQNGIS..VKVNLN.EEES.LKK....LW.IQKELQ | |
Retrocopy | GLYGINEDVFLSVPCVLGQNGISHMVKVNLNPEEESCLKKIADILWEIQKELQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |