RetrogeneDB ID: | retro_meug_980 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold25079:12023..12958(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 82.8 % |
Parental protein coverage: | 93.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSGKDYSVTANS |
QNKITVVGV.AVGMA.AIS.LTKE.ADELALVDVIE.KLKGEMMDLQHGSLFLK.PKIVSGKDYS.TANS | |
Retrocopy | QNKITVVGVDAVGMARAISILTKEMADELALVDVIEGKLKGEMMDLQHGSLFLKMPKIVSGKDYSGTANS |
Parental | KLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVAWKLSGFPKNRVI |
KLVIV..GA..QE.ES.L.LVQRNV.IFKFIIPN.VKYSPNCKLL.VSN.VDILTYVAWKLSGFPKN..I | |
Retrocopy | KLVIVMDGAHPQERESHLHLVQRNVKIFKFIIPNTVKYSPNCKLLTVSNLVDILTYVAWKLSGFPKNHLI |
Parental | GSGCNLDSARFRYLM-GERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTDSDAENWK |
GSGCNLDSA.FRYLM.GERLG.HS.SCHGWVLGEHGDSSVPVW..VNL.G.SLKN.HPSLGT...AENWK | |
Retrocopy | GSGCNLDSACFRYLM<GERLGIHSSSCHGWVLGEHGDSSVPVWNSVNLVGMSLKNRHPSLGTNAHAENWK |
Parental | DVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXXXXVFHSVSYVLGQN |
DVHKQVV.SAYEVIKLKG.TSWAIG.SVADLAES.MKNLRRVHPISTMIK........VF.SV..VLGQN | |
Retrocopy | DVHKQVVQSAYEVIKLKGCTSWAIGMSVADLAESTMKNLRRVHPISTMIKGLCGINEDVFFSVPCVLGQN |
Parental | GISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
GISDVVK.NLN..E.SH.KKS..TLWGIQKELQF | |
Retrocopy | GISDVVKINLNS-EDSHSKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |