RetrogeneDB ID: | retro_meug_101 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_2303:55910..56490(-) | ||
Located in intron of: | ENSMEUG00000014944 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 76.14 % |
Parental protein coverage: | 58.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KLLIVSNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVW |
KLL.VSNPVDILT...WKLS.FPKN.VI.SGCNL.S.RF.YLMGERLGVHS.SC.GW.LGE.GDSSVPVW | |
Retrocopy | KLLLVSNPVDILT---WKLSSFPKNHVIESGCNLVSTRFHYLMGERLGVHSSSCYGWILGEQGDSSVPVW |
Parental | SGVNLAGVSLKNLH-PSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRV |
SGVNLA.VSLKNLH....GTD.D.ENWKDV..QV.ESA.EVIKLKG.TSW..GLSVADLA.SIMKNLRRV | |
Retrocopy | SGVNLASVSLKNLH>SPFGTDTDSENWKDVLEQVDESACEVIKLKGFTSWTVGLSVADLA*SIMKNLRRV |
Parental | HPISTMIKXXXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQ |
H.IS.MIK........VF.SV..VL.QNGISDVVKVNLN.EEES.LKK.T.TLWGIQ | |
Retrocopy | HRISIMIKGLYGIHEDVFLSVPCVLRQNGISDVVKVNLNPEEESCLKKGTDTLWGIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |