RetrogeneDB ID: | retro_meug_1400 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold3911:28864..29867(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 75.96 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
M.S.VKDQLILNVLKEDQVPQNKITVVGVGAVGM...IS.LTK.LADEL.LVDVIEDK.KGEMMD.QHG. | |
Retrocopy | MTSIVKDQLILNVLKEDQVPQNKITVVGVGAVGMS--ISILTKDLADELVLVDVIEDKVKGEMMDVQHGR |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LFLKTPKI.S.KDYSVTANSKLVI..AGA.QQE.ES.LNLVQ.NVNIFKFII.NIVK.SPNC.LLIV..P | |
Retrocopy | LFLKTPKIISDKDYSVTANSKLVIAIAGAYQQERESHLNLVQHNVNIFKFIIHNIVKCSPNCNLLIVTSP |
Parental | VDILTYVAWKLSGFPK-NRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAG |
VD.L....WK.S.FPK.N.VI.SGCNLDSA...YL.G.RLGV.S.SCHGWV.G.HGD.SVPVWS.VN.A. | |
Retrocopy | VDFLPHEIWKPSDFPK>NHVIVSGCNLDSASLSYLIGKRLGVYSSSCHGWVVGKHGDYSVPVWSSVNFAV |
Parental | VSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIK |
VSLKN.HP.LGTD.D.ENWK.VHKQV.ESAYE.IK.KG.TSWAIGLSVADLAES.MKNLRRVHPI..MIK | |
Retrocopy | VSLKNHHPPLGTDVDSENWKYVHKQVIESAYEMIKPKGCTSWAIGLSVADLAESMMKNLRRVHPIFPMIK |
Parental | XXXXXXXXVFH---SVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
.........F....SV..VL.QNGI.DVVKVNLN.EEES.LKK...TLWGIQKELQF | |
Retrocopy | ALYGIYEDIFSFLMSVPCVLRQNGI*DVVKVNLNPEEESCLKKRVDTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |