RetrogeneDB ID: | retro_meug_336 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold102380:1118..1951(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 88.17 % |
Parental protein coverage: | 82.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
MAS.VKDQL.LNVLKEDQVPQNKITVVG.GAVGMACAI..LTKEL.DELALVDVIE.KLK.EMMDLQH.S | |
Retrocopy | MASAVKDQLTLNVLKEDQVPQNKITVVGIGAVGMACAINILTKELTDELALVDVIENKLKREMMDLQHCS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LFLKTPKIVSGKDYSVTANSKLVIVTAG..QQEGES.L.LVQ.NVNIFK.IIP..VKYSPNCKLLIVSNP | |
Retrocopy | LFLKTPKIVSGKDYSVTANSKLVIVTAGTPQQEGESHLHLVQHNVNIFKVIIPYNVKYSPNCKLLIVSNP |
Parental | VDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGE-HGDSSVPVWSGVNLAG |
VDILTY..WKL.GFPKNRVI.SGCNLDSA.F.YLMGERLGVHS.SCHGWVLGE.HGDSSVPVWS..NLAG | |
Retrocopy | VDILTYMSWKLNGFPKNRVIESGCNLDSALFHYLMGERLGVHSSSCHGWVLGE>HGDSSVPVWSSMNLAG |
Parental | VSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVH-PISTM |
VSLKNLHPSL.TD.DAENWKDVHKQVVESAY.VIKLKGYTSWAIGLSV.DLA.SIMKNLRRVH.PISTM | |
Retrocopy | VSLKNLHPSLRTDADAENWKDVHKQVVESAYKVIKLKGYTSWAIGLSVVDLADSIMKNLRRVH>PISTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |