RetrogeneDB ID: | retro_meug_1356 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold379154:60..899(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 87.9 % |
Parental protein coverage: | 83.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMA.AIS.LTK.LADELALVDVIE.KLKGEMMDLQHGS | |
Retrocopy | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMARAISILTKQLADELALVDVIEYKLKGEMMDLQHGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCK-LLI-VS |
LFLKTPKIVSGKD.SVTANSKLVIVTAGA.QQEGES.LNLVQ.N.NIFKFIIPN.VKYSPNCK.L....S | |
Retrocopy | LFLKTPKIVSGKDDSVTANSKLVIVTAGACQQEGESLLNLVQCNMNIFKFIIPNTVKYSPNCKLLIV<FS |
Parental | NPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLA |
.PVDILTYVAWKLSGFPKN.VIGSGCNLDSA.F.Y...ERLGV.S.SC.GWVLGEHGDS.VPVWSGVNLA | |
Retrocopy | HPVDILTYVAWKLSGFPKNHVIGSGCNLDSAHFCYPIKERLGVLSSSCQGWVLGEHGDSNVPVWSGVNLA |
Parental | GVSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMI |
GVSLKNLH.SLGTD.DA.NWKD.HKQ.VESAYEVIKLKGYTSWAIGLSVA.LAESIMKNL.RVHPISTMI | |
Retrocopy | GVSLKNLHSSLGTDADAQNWKDIHKQMVESAYEVIKLKGYTSWAIGLSVAYLAESIMKNLMRVHPISTMI |
Parental | K |
. | |
Retrocopy | R |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |