RetrogeneDB ID: | retro_chof_2121 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_51249:3203..3795(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSCHOG00000009977 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 77.27 % |
Parental protein coverage: | 59.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | YSPNCKLFAVSNP-DILTYVAWKISGFPKN-RVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGD |
Y.PNCKL..VSN...ILT.V.WKISGFPK..RV.GSGC.L.SA.F.YLMGERLGVHPLSCH.WVLGEHGD | |
Retrocopy | YNPNCKLLVVSNSVGILTCVVWKISGFPKK>RVTGSGCDLNSAQFHYLMGERLGVHPLSCHDWVLGEHGD |
Parental | SSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMK |
SSVPVWS.VNVAG.SLKNL.PELGTDA.KE.WKEVHKQVV.SAY.VIKLKGYTSWAIGLSV.D..ESI.K | |
Retrocopy | SSVPVWSEVNVAGASLKNLYPELGTDAAKEQWKEVHKQVVYSAYKVIKLKGYTSWAIGLSVEDVTESIIK |
Parental | NLRRVHPVSTLIK-LYGIKDDVFLSVPCILGQNGISDIIKVTLTPEEEAHMKKRADIL |
.LR.VHPVST..K.L.GIKDD.FLSV.C.LGQNGISDI.KV.LTPEEEA..K.....L | |
Retrocopy | TLRWVHPVSTMVKGLCGIKDDIFLSVLCLLGQNGISDIVKVSLTPEEEACLKPECQVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |