RetrogeneDB ID: | retro_mmul_2219 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:37776108..37776660(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4417 | ||
Ensembl ID: | ENSMMUG00000011196 | ||
Aliases: | NSA2, TINP1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_001248690] |
Percent Identity: | 87.1 % |
Parental protein coverage: | 70.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVVRTGKRKKKAW |
N.EK.PQGAVPAYLLDREGQS.AKVLSNMIK.KRKEKAGK.EVPLPKVRAQGETE.LKV.RTGKRKKKAW | |
Retrocopy | NAEKIPQGAVPAYLLDREGQSQAKVLSNMIKRKRKEKAGKGEVPLPKVRAQGETEGLKVIRTGKRKKKAW |
Parental | KRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKA-TFCLPILGVKKNPSS-PLYTTLGVI |
KR.VT.VCFVGDGFTR.PPKYERFIRPMGLRFKKAHVTH.ELKA.TFCLP.LGVKKN.SS.PLYTT.GVI | |
Retrocopy | KRLVTNVCFVGDGFTRIPPKYERFIRPMGLRFKKAHVTHCELKA>TFCLPVLGVKKNSSS<PLYTTSGVI |
Parental | TKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
T.GTVIEVNVS.LGLV.QGGKV...KYAQVTNNPEND.CIN.VLLV | |
Retrocopy | TTGTVIEVNVSKLGLVMQGGKVTCRKYAQVTNNPENDRCINVVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .08 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 32 .93 RPM |
SRP007412_heart | 0 .00 RPM | 52 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 60 .68 RPM |
SRP007412_liver | 0 .00 RPM | 31 .51 RPM |
SRP007412_testis | 0 .00 RPM | 61 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1577 |
Pan troglodytes | retro_ptro_1063 |
Gorilla gorilla | retro_ggor_1200 |
Pongo abelii | retro_pabe_1300 |