RetrogeneDB ID: | retro_mmul_2523 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:99617669..99618445(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4417 | ||
Ensembl ID: | ENSMMUG00000011196 | ||
Aliases: | NSA2, TINP1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_001248690] |
Percent Identity: | 89.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMI-GLKAKLYHKQRHAEKIQMKKTIKMHE |
MPQNEYIELH.KRYGY.LDYHEKKRKKES.EAH.RSKKAKKM..GLKAKLYHKQ.HAEKIQMKKTIKMHE | |
Retrocopy | MPQNEYIELHCKRYGYHLDYHEKKRKKESQEAH*RSKKAKKMM<GLKAKLYHKQHHAEKIQMKKTIKMHE |
Parental | KRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVVRTG |
KRNTKQKND.KTPQG.VPAYLLDREGQS.A.VLSNMIKQK.KEK.GKWEVPLP.VRAQGETEVLKV..TG | |
Retrocopy | KRNTKQKNDAKTPQGSVPAYLLDREGQSQATVLSNMIKQK*KEKVGKWEVPLPEVRAQGETEVLKVIQTG |
Parental | KRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYT |
KRK..AWKRMVTKVCFVGDGFTRK.PKY.R.IRP.GLRFKKAHV.HPE.KATFCLPILG.KKNPSSPLYT | |
Retrocopy | KRKT-AWKRMVTKVCFVGDGFTRKSPKYGRLIRPLGLRFKKAHVIHPEPKATFCLPILGIKKNPSSPLYT |
Parental | TLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
.LGVITKGTVIEVNVSELGLVTQGGKVIWGKY.QVTNNPENDG.INAVLLV | |
Retrocopy | ALGVITKGTVIEVNVSELGLVTQGGKVIWGKYDQVTNNPENDGWINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .08 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 32 .93 RPM |
SRP007412_heart | 0 .00 RPM | 52 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 60 .68 RPM |
SRP007412_liver | 0 .00 RPM | 31 .51 RPM |
SRP007412_testis | 0 .00 RPM | 61 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4731 |
Pan troglodytes | retro_ptro_3146 |