RetrogeneDB ID: | retro_shar_292 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841244.1:222288..223039(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSSHAG00000017654 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 71.71 % |
Parental protein coverage: | 96.15 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | PQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKR |
P....IELH.K.YGY.LDYH...................KMIGLKAKLYHKQ...EKIQMKKTIKMHEKR | |
Retrocopy | PSTCHIELH*KQYGYYLDYHXXXXXXXXXXXXXXXXXXXKMIGLKAKLYHKQHLNEKIQMKKTIKMHEKR |
Parental | NTKQKNDEK-TPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK |
NTK.KN..K.TPQG..PAYLLDRE.QS.AKVLSNMIK.K.KEKAGKWEV.LPK..A...TEVLKVI.TGK | |
Retrocopy | NTKKKNNLK>TPQGSMPAYLLDRERQSQAKVLSNMIKRK*KEKAGKWEVSLPKI*A*DKTEVLKVIHTGK |
Parental | RKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTT |
RKKKA.KRMV.KV.F.GD.FT.K..KYERFI.PMGL.FKK.HVTHP.LKATFCLPILG.KKNPSSPLYT. | |
Retrocopy | RKKKA*KRMVIKVSFAGDNFT*KSLKYERFIGPMGLCFKKTHVTHPDLKATFCLPILGMKKNPSSPLYTS |
Parental | LGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPEND |
LGVI.K...I.VNVSELGL.TQG.K.I.GKYAQVTNN.EN. | |
Retrocopy | LGVIIKEIIIKVNVSELGLMTQGDKIIQGKYAQVTNNLENN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |