RetrogeneDB ID: | retro_mmul_408 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:125967986..125968768(+) | ||
Located in intron of: | ENSMMUG00000031776 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4417 | ||
Ensembl ID: | ENSMMUG00000011196 | ||
Aliases: | NSA2, TINP1 | ||
Description: | ribosome biogenesis protein NSA2 homolog [Source:RefSeq peptide;Acc:NP_001248690] |
Percent Identity: | 85.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
MPQ.EYIELHRKRYGYRLDYHEKKRK.ESREAHERSKKAKKMIGLKAKLYHKQRHA.............. | |
Retrocopy | MPQTEYIELHRKRYGYRLDYHEKKRKEESREAHERSKKAKKMIGLKAKLYHKQRHAXXXXXXXXXXXXXX |
Parental | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVVRTGK |
......NDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAG.WEVPLPKVRAQG.TEVLKV.R.GK | |
Retrocopy | XXXXXXNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGNWEVPLPKVRAQGKTEVLKVIRIGK |
Parental | RKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSS-PLYT |
RKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRP.GLRFKKAHVTHPELKATFCLPI.GVKKNPSS.P... | |
Retrocopy | RKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPTGLRFKKAHVTHPELKATFCLPIFGVKKNPSS<PTVY |
Parental | TLGV-ITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
..G..ITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINA.LLV | |
Retrocopy | NFGCNITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAILLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 36 .08 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .16 RPM |
SRP007412_cerebellum | 0 .13 RPM | 32 .93 RPM |
SRP007412_heart | 0 .24 RPM | 52 .29 RPM |
SRP007412_kidney | 0 .35 RPM | 60 .68 RPM |
SRP007412_liver | 0 .00 RPM | 31 .51 RPM |
SRP007412_testis | 0 .11 RPM | 61 .10 RPM |