RetrogeneDB ID: | retro_shar_336 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841376.1:1061338..1061902(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSSHAG00000017654 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 64.47 % |
Parental protein coverage: | 74.23 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | DYHEKKRKKESREAHERSKKAKK-MIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVP |
DY.EKKRKKE..E..E.SKKAKK.MI.L.AK.YHKQ.H.EKIQMK.TIKMH..RNT.QKNDEK.P..... | |
Retrocopy | DYQEKKRKKEC*ESNEHSKKAKK>MISLRAKFYHKQHHPEKIQMKNTIKMHKNRNTQQKNDEKFPHRTAS |
Parental | AYLLDREGQ-SRAKVLSNMIKQKRKE-KAGKWEVPLPKVRAQGETEVL-KVIRTGKRKKKAWKRMVTKVC |
AYLLDRE.Q.S...VLSN.IKQK.KE.KA..WE..LPKV.AQ.E.EVL.K.I...K.K.K.WK.MV.K.C | |
Retrocopy | AYLLDREVQ>SSYIVLSNTIKQK*KE<KANNWEGLLPKVCAQREKEVL<KIIHIDKKKEKVWKKMVAKIC |
Parental | FVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTL |
FV....T.KP.KYERFIR...L.FKK.H.T..E.KATF.L..LGV.KN.S.PLY.TL | |
Retrocopy | FV----T*KPLKYERFIRLACLYFKKVHITYSECKATFYLLTLGV-KNFSFPLYITL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |