RetrogeneDB ID: | retro_itri_1630 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393594.1:133005..133359(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSSTOG00000007959 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 69.49 % |
Parental protein coverage: | 69.01 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | IGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQTRAKVLSNMIKQKRKE |
IGLK.K.YHK....EKIQMK.TIKMHEKRN.KQKND.KT.QGAVP.YLLDRE.Q..AKVLS.M..Q.RKE | |
Retrocopy | IGLKTKVYHK*HYTEKIQMKTTIKMHEKRNAKQKNDDKTSQGAVPSYLLDREAQSQAKVLSSMVLQNRKE |
Parental | KAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGF |
..G...VPLPKV.AQGETEVLKV....KRKKK...RM...VCFVG..F | |
Retrocopy | TSGN**VPLPKVHAQGETEVLKVV*IVKRKKKV*RRMAARVCFVGYDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |