RetrogeneDB ID:

retro_nleu_1929

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397316.1:11442851..11443629(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NSA2
Ensembl ID:ENSNLEG00000005046
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1929
ATGCCACAGAACTAATATATTGAATTACACCGTAAACGCTATGGATACCATTTGGATTACCATGAGAAAAAGAGAAAGAA
GGAAAATTGAGAGGCTCATGAACGTTCAAAGAAAGCAAAGAAAATGATTGGTCTGAAGGCTAAGCTTTACCATAAACAGC
GTCATGCTGAGAAAATACAAATGAAAAAGACTATCAAGATGCCATGAAAAGAGAAACACCAAACAAAAGAATGATGAAAA
GACTCCACAGGGAGCAGTACCTGCCTATCTGCTGGACAGAGAGGGACAATCTCCAGCTAAAGTACTTTCCAATATGATTA
AACAGAAACGAAAAGAGAAGGCGGGAAAATGGGAAGTCCCTCTGCCTAAAGTACTTGCCCAGGGAGAAACAGAAGTATTA
AAAGTTATTCGAACAGGAAAGAGAAAGAAGGCATGGAAGAGGATGGTTACTAAAGTGTGCTTTGTTGGAGATGGCTTTAC
AAGAAAACCACCTAAATATGAAAGATTCATCAGGCCAATGGGCTTGCGTTTCAAGAAAGCCCATGTAACACATCCTGAAC
TGAAAGCCACCTTTTGCCTACCAATACTTGGTGTAAAGAAGAATCCCTCATCCCCACTGCATACAACTTTGGGTGTTATT
ACCAAAGGTACTGTCATTGAAGTAAATGTGAGTGAATTGGGCCTTGTGACGCAAGGAGGCAAAGTTATTTGGGGAAAATA
TGCCCAGGTTACCAACAATCCTGAAAATGATGGATGTATAAATGCAGTCTTACTGGTC

ORF - retro_nleu_1929 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.79 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKI-HE
MPQN.YIELHRKRYGY.LDYHEKKRKKE..EAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIK..HE
RetrocopyMPQN*YIELHRKRYGYHLDYHEKKRKKEN*EAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKM>HE
ParentalKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTG
KRNTKQKNDEKTPQGAVPAYLLDREGQS.AKVLSNMIKQKRKEKAGKWEVPLPKV.AQGETEVLKVIRTG
RetrocopyKRNTKQKNDEKTPQGAVPAYLLDREGQSPAKVLSNMIKQKRKEKAGKWEVPLPKVLAQGETEVLKVIRTG
ParentalKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYT
KR.KKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPL.T
RetrocopyKR-KKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLHT
ParentalTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLI
TLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLL.
RetrocopyTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1929 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 175 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000083114 retrocopies
Callithrix jacchus ENSCJAG000000168741 retrocopy
Dasypus novemcinctus ENSDNOG000000106151 retrocopy
Echinops telfairi ENSETEG0000000409513 retrocopies
Felis catus ENSFCAG000000119781 retrocopy
Homo sapiens ENSG000001643464 retrocopies
Gorilla gorilla ENSGGOG000000143656 retrocopies
Loxodonta africana ENSLAFG000000099104 retrocopies
Macropus eugenii ENSMEUG000000157983 retrocopies
Microcebus murinus ENSMICG000000007523 retrocopies
Macaca mulatta ENSMMUG000000111966 retrocopies
Monodelphis domestica ENSMODG000000019004 retrocopies
Mustela putorius furoENSMPUG000000057955 retrocopies
Nomascus leucogenys ENSNLEG00000005046 10 retrocopies
Oryctolagus cuniculus ENSOCUG000000065366 retrocopies
Ochotona princeps ENSOPRG000000018677 retrocopies
Pongo abelii ENSPPYG000000259268 retrocopies
Pan troglodytes ENSPTRG000000169906 retrocopies
Rattus norvegicus ENSRNOG0000001653015 retrocopies
Sorex araneus ENSSARG000000094244 retrocopies
Sarcophilus harrisii ENSSHAG000000176545 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000079593 retrocopies
Tupaia belangeri ENSTBEG0000001297856 retrocopies



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