RetrogeneDB ID: | retro_opri_1145 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_7937:45162..45713(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSOPRG00000001867 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 77.96 % |
Parental protein coverage: | 70.77 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | TKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRK |
TKQ.NDEKT.QGAVPAYLLD.E.QS...VLSN.IKQK.KEKAGKW.V.L.K..AQGE.EVLK.I.TGKRK | |
Retrocopy | TKQNNDEKTAQGAVPAYLLDKE*QSCSNVLSN-IKQK*KEKAGKWDVLLSKACAQGEIEVLKFIPTGKRK |
Parental | KKA-WKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTL |
KK..WKR.VTK..F.GD.FTRKPPKYERFIRPMGL.FKKAHVTHP.LKATFCLPI..VKK.PSS.LY.TL | |
Retrocopy | KKVQWKRVVTKI*FFGDDFTRKPPKYERFIRPMGLHFKKAHVTHPALKATFCLPIFNVKKIPSSLLYKTL |
Parental | GVITKGTVIEVNVSELG-LVTQGGKVIWGKYAQVTNNPENDGCINA |
GVIT.GTVIEV.VSE.G.LV.QG.KV.WG.YA.VTN.PENDGCINA | |
Retrocopy | GVITEGTVIEVKVSEFG<LVIQGAKVVWGSYALVTNSPENDGCINA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |