RetrogeneDB ID: | retro_shar_495 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL849686.1:1963195..1963652(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSSHAG00000017654 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 58.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLR |
QK.KEKAGKWEV.LPKV..QGETEVL.VI.TGKRKKK..KR..TK.CFVGDGFTRKPPKYERFI....L. | |
Retrocopy | QK*KEKAGKWEVSLPKVWVQGETEVLEVICTGKRKKKV*KRK-TKICFVGDGFTRKPPKYERFIKLKDLC |
Parental | FKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVIT-KGTVIEVNVSELGLVTQGGKVIWGKYAQVTN |
FKKAHVTHPE.KATFCLPILGVKK..SS.LYTTLG.IT.KG.VIE.NVSEL.LVTQ.GKVIWGKYAQVTN | |
Retrocopy | FKKAHVTHPEFKATFCLPILGVKKKLSSKLYTTLGIIT>KGIVIEMNVSELDLVTQEGKVIWGKYAQVTN |
Parental | NPENDGCINAVLLV |
NPENDGCINAVLLV | |
Retrocopy | NPENDGCINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |