RetrogeneDB ID: | retro_dord_662 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_49711:312..630(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps27a | ||
Ensembl ID: | ENSDORG00000006291 | ||
Aliases: | None | ||
Description: | ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544] |
Percent Identity: | 75.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MQIFVKTLTGKTI-TLEVEPSDTIENVK-AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH |
MQIFVKTL.G.TI....VEP.DT.ENV..AKIQDKEG.PPD.QRL..AGKQLEDG..LS.YNI.KES.LH | |
Retrocopy | MQIFVKTLMGNTI<PFVVEPLDTTENVI>AKIQDKEGMPPD*QRLMVAGKQLEDGCSLSTYNIKKESILH |
Parental | LVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYK |
L.LR.RG..KKR.KKSYTTPKKNKHKRK..KL.VLKYYK | |
Retrocopy | LLLRPRGSVKKR-KKSYTTPKKNKHKRKNAKLVVLKYYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |