RetrogeneDB ID: | retro_tbel_4484 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_8528:6248..6542(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS27A | ||
Ensembl ID: | ENSTBEG00000004626 | ||
Aliases: | None | ||
Description: | ribosomal protein S27a [Source:HGNC Symbol;Acc:10417] |
Percent Identity: | 59.8 % |
Parental protein coverage: | 94.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSDYNIQKESTLHLVL |
IF..T..G....L.V.......NVKAKI.DK.G.PPDQQR..FAGK...EDGRTL.D.NI.KESTLHLVL | |
Retrocopy | IFIVTVWGRPSPLRVNLWTQL-NVKAKI*DKKGFPPDQQRPTFAGK>SREDGRTLLDDNI*KESTLHLVL |
Parental | -RLRGGAKKRKKKSYTTPKKNKHKRKSTLVAL |
..L.GGAK.R..KS.TTPKKNK..RK....A. | |
Retrocopy | <ELCGGAKQR-DKSFTTPKKNKPERKKVKLAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |