RetrogeneDB ID: | retro_dord_584 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_35986:5759..6069(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps27a | ||
Ensembl ID: | ENSDORG00000006291 | ||
Aliases: | None | ||
Description: | ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544] |
Percent Identity: | 74.07 % |
Parental protein coverage: | 99.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHL |
MQIF.K.L.GKTITLEVEP.DTIENV.AKI..KEGIP.DQQ.LIFAGK.LEDG.TL..DY.IQKESTLH. | |
Retrocopy | MQIFSKILIGKTITLEVEPLDTIENVMAKIRAKEGIPSDQQSLIFAGKRLEDGCTL<TDYSIQKESTLHP |
Parental | VLRLRGGAKKRKKKSYTTP-KKNKHKRKKVKLAVLKYY |
VLR..G.AK...K.S...P.KKNKHKR.KVKLAVL.YY | |
Retrocopy | VLRFQGCAKE-EKVSHQLP<KKNKHKR-KVKLAVLEYY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |