RetrogeneDB ID: | retro_dord_114 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_3429:48126..48409(-) | ||
Located in intron of: | ENSDORG00000014934 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps27a | ||
Ensembl ID: | ENSDORG00000006291 | ||
Aliases: | None | ||
Description: | ribosomal protein S27A [Source:MGI Symbol;Acc:MGI:1925544] |
Percent Identity: | 68. % |
Parental protein coverage: | 90.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KTITLEVEPS-DTIENVKAK-IQDKEGIPPDQQRLI-FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA |
K.ITLEVEP..DT.EN.KA..IQDK.GI.PDQQ.L...AGKQLEDGR..S.YN.QK.STL...LRL..GA | |
Retrocopy | KPITLEVEPE<DTGENMKAQ>IQDKQGISPDQQKLV>LAGKQLEDGRA*SYYNLQKKSTLNHPLRLHSGA |
Parental | KKRKKKSYTTPKKNKHKRKKVKLAVLKYYK |
KKR.KK.YT..KKN.HKRK.V.L.VLK.YK | |
Retrocopy | KKR-KKLYT--KKNNHKRK*VTLTVLKHYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |