RetrogeneDB ID: | retro_sscr_506 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 15:92352640..92353096(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSSSCG00000007381 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 82.69 % |
Parental protein coverage: | 62.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MTMDKSELVQKAKLAEQAERYDDMAAAMK-AVTEQGHELSNEERNLLSVA-YKNVVGARRSSWRVISSIE |
M.MDKSELVQKAKL.EQAE.YDDMA.AM..AV.EQG.ELSNEERNLLSVA..KN.VGA..SSW.VISSI. | |
Retrocopy | MAMDKSELVQKAKLTEQAELYDDMAEAMR<AVIEQGYELSNEERNLLSVA<LKNIVGAHLSSWHVISSIQ |
Parental | QKTERNEKKQQMGKEYREKIEAEL-QDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASG |
Q.TERN...QQMGKEYREKIEAEL.QDI.NDVLELLDKYLI.NA..PESKVFYLKMKGDYFRYLSEVASG | |
Retrocopy | QETERNQEQQQMGKEYREKIEAEL<QDIFNDVLELLDKYLISNAI*PESKVFYLKMKGDYFRYLSEVASG |
Parental | DNKQTTVSNSQQAYQE |
DNKQTTV..SQ.AYQE | |
Retrocopy | DNKQTTV*SSQ*AYQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 192 .59 RPM |
SRP014902_testis | 0 .00 RPM | 203 .82 RPM |
SRP018288_heart | 0 .00 RPM | 127 .27 RPM |
SRP018288_kidney | 0 .00 RPM | 251 .58 RPM |
SRP018288_liver | 0 .16 RPM | 102 .18 RPM |
SRP018288_lung | 0 .00 RPM | 255 .69 RPM |
SRP018856_adipose | 0 .00 RPM | 276 .17 RPM |
SRP035408_brain | 0 .00 RPM | 1151 .76 RPM |
SRP035408_liver | 0 .00 RPM | 134 .10 RPM |